{"id":24,"date":"2020-08-24T14:18:08","date_gmt":"2020-08-24T14:18:08","guid":{"rendered":"https:\/\/bioml.lis-lab.fr\/?page_id=24"},"modified":"2026-05-04T09:45:09","modified_gmt":"2026-05-04T09:45:09","slug":"home","status":"publish","type":"page","link":"https:\/\/bioml.lis-lab.fr\/","title":{"rendered":"Research"},"content":{"rendered":"\n

The Villoutreix Lab bridges machine learning and developmental biology to understand tissue architecture. We develop inference methods to characterize tissues at single-cell resolution, integrating microscopy with multi-omics data. Our core interest is to model the mapping between two distinct aspects: the high-dimensional geometry of gene expression and the physical geometry of living tissue.<\/p>\n\n\n\n

We currently collaborate with several biology labs such as the Kelly lab<\/a> (cardiac development) and the Bertrand lab<\/a> (C. elegans) in Marseille, the Ghavi-Helm lab<\/a> (Drosophila development) in Lyon. We also work closely with Mathematicians, Computer scientists and Physicists such as Paul Escande<\/a> in Toulouse, Thierry Arti\u00e8res<\/a> in Marseille and Raphael Cl\u00e9ment<\/a> in Marseille and within the AI4scMed consortium<\/a>.

Previous international collaborations include Gunnar Carlsson<\/a> at Stanford University, Stas Shvartsman<\/a> at Princeton University, Eli Zelzer<\/a> at the Weizmann Institute of Science and the Sbalzarini lab<\/a> at the Center for Systems Biology Dresden.<\/p>\n\n\n\n

Our group is hosted in the SysBioMed team<\/a> led by Anais Baudot, and part of the Turing Center for Living Systems<\/a>.<\/p>\n\n\n\n

We are located at
Marseille Medical Genetics<\/a>
Facult\u00e9 de M\u00e9decine
27 Bd Jean Moulin
13005 Marseille
FRANCE<\/p>\n\n\n\n

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The Villoutreix Lab bridges machine learning and developmental biology to understand tissue architecture. We develop inference methods to characterize tissues at single-cell resolution, integrating microscopy with multi-omics data. Our core interest is to model the mapping between two distinct aspects: the high-dimensional geometry of gene expression and the physical geometry of living tissue. We currently … <\/p>\n

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